SNP Profiles of GU 261   View Data

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 Key

 1234567891011121314
_Input profile
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
1._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
2._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
3._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
4._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
5._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
6._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
7._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
8._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
9._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
10._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
11._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
12._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
13._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
14._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
15._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
16._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
17._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
18._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
19._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
20._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
21._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
22._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
23._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
24._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
25._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
26._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGG_AA
27._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
28._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
29._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
30._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
31._GU_261_/P
CCCCCCTTTTTTCCCC_GGCCGGCCAA
32._RUQ_1370
_CCCC__TT____CCGG__
33._RUQ_1370
CCCCCCTTTTTTCCCCAAGGCCGGCCAA
34._GU_261_/P
CCCCCCTTTTTTCCCCAAGGCCAGCCAA
35._GU_261_/P
CCCCCCTTTTGTCCCC_GGCCGGCCAA
36._RUQ_1370
_CC___TT_CC_GG_GG__
37._RUQ_1370
_GG________CC_CC_
38._RUQ_1370
GGGGGGAAAAAA__AAGGGGGGGGAA
 1516171819202122232425262728
_Input profile
GGCCCCGGGGAGCCACCCGGCCAAGGGG
1._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
2._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
3._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
4._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
5._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
6._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
7._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
8._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
9._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
10._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
11._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
12._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
13._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
14._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
15._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
16._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
17._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
18._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
19._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
20._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
21._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
22._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
23._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
24._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
25._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
26._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
27._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
28._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
29._GU_261_/P
GGCCCCGGGGAGCCACCCGGCC_GGGG
30._GU_261_/P
GG_CCGGGGAGCCACCCGGCCAAGGGG
31._GU_261_/P
GGCC_GGGGAGCCACCCGGCCAAGGGG
32._RUQ_1370
__CCGGGG_CCACCCGGCCAAGG_
33._RUQ_1370
GGCCCCGGGGAACCACCCGGCCAAGGGG
34._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
35._GU_261_/P
GGCCCCGGGGAGCCACCCGGCCAAGGGG
36._RUQ_1370
___GGGGAA_ACCC__AA__
37._RUQ_1370
__CCCC___ACCC_____
38._RUQ_1370
GGGGGGCCCC_GGACCCCC_AA_GG
 29303132333435363738    
_Input profile
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
1._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
2._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
3._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
4._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
5._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
6._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
7._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
8._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
9._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
10._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
11._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
12._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
13._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
14._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
15._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
16._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
17._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
18._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
19._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
20._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
21._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
22._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
23._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
24._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
25._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
26._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
27._GU_261_/P
AACCGGCCAA_TTAAAAGGX_XX_XX_XX_X
28._GU_261_/P
AACCGGCCAA_TTAAAAGGX_XX_XX_XX_X
29._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
30._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
31._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
32._RUQ_1370
AACCGGCCAATTTTAA__X_XX_XX_XX_X
33._RUQ_1370
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
34._GU_261_/P
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
35._GU_261_/P
AACCGGCCAC_TTAAAAGGX_XX_XX_XX_X
36._RUQ_1370
__GG____AA__X_XX_XX_XX_X
37._RUQ_1370
AA_GGGGAATT_AA__X_XX_XX_XX_X
38._RUQ_1370
AAGGGGGGAAAAAAAAAAGGX_XX_XX_XX_X

Input profile: GU_261_/P

 
Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

1._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

2._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

3._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

4._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

5._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

6._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

7._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

8._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

9._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

10._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

11._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

12._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

13._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

14._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

15._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

16._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

17._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

18._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

19._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

20._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

21._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

22._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

23._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

24._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

25._GU_261_/P

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

26._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

27._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

28._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

29._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

30._GU_261_/P

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

31._GU_261_/P

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

32._GU_261_/P RUQ_1370

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._GU_261_/P RUQ_1370

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._GU_261_/P

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

35._GU_261_/P

97.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

37._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

45.5 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25